species:   Vamal
pid:       PID1214
parent:    Vm-milR5
paralog:   
locus:     CM003104.1:2981318-2981562
matures:   ['UCGGCUUAGUAUCGGUAACGU', 'GGCUAUCGGUAUUAAGCCUUAG']
srr:       SRR9103190
genome:    /Users/jax/+Genomes/Fungal_genomes/Vamal.GCA_000818155.1_ASM81815v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xu2020-uk.SRR9103190.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xu2020-uk.SRR9103190.cram CM003104.1:2981318-2981562

0 out of bounds
0 alignments
0 proper strand
0 stranded perfect matches

                                                                                                              ***********************                                ************************                                                        
UAUACUUUACUUUCUAGUGCCUAUAGUGCCCCUAGUAUAGUAGUUAUAAUCGCUAUUACCUAGCUGUUAUAGUUAGCCUUCUAGCUAUUAUUCGGCUAUAGUCGGCGAUGCUUCGGCUUAGUAUCGGUAACGUAACGACUGCGCUUCGGCUAUAAUAAGCUUUCGGCGGCUAUCGGUAUUAAGCCUUAGCCCACUAUAAUUAUAUACCUUCCCUUCUAAGCCUUACAGCUAUAGAUCUCUAUAUA
((((((.......(((.......))).......))))))(((((((((((((((((((..((((((..((((((((....))))))))....)))))))))).))))))(((..(((((((((((((((.(((..(((..((................))..))))))..)))))))))))))))..)))....)))))))))...........(((((((......))).))))..........
----------------------------------------------------------------------------------------------------------------UCGGCUUAGUAUCGGUAACGU---------------------------------------------------------------------------------------------------------------- l=21 a=0 c
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCUAUCGGUAUUAAGCCUUAG-------------------------------------------------------- l=22 a=0 c*
----------------------------------------------------------------------------------------------------------------UCGGCUUAGUAUCGGUAACGU---------------------------------------------------------------------------------------------------------------- l=21 a=0 ma
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCUAUCGGUAUUAAGCCUUAG-------------------------------------------------------- l=22 a=0 ma*


No alignments to locus

mb-01011
ax-1011011
ku-01
ss-000110011100
fn-001
